All projects

Note: artifacts in italics are non-canonical forks. See the wiki for more details.

• org.clojars.chapmanb/bigwig r39

  
  Java reader for UCSC BigWig / BigBed formats http://code.google.com/p/bigwig/

  ---

  chapmanb 2013-06-05
• org.clojars.chapmanb/biomart-client 1.0.0-SNAPSHOT

  
  Clojure client interface to BioMart

  ---

  chapmanb 2011-03-30
• org.clojars.chapmanb/circdesigna 0.0.2

  
  Synthetic biology design tool with support for extensible sequence constraints

  ---

  chapmanb 2012-10-15
• org.clojars.chapmanb/clucy 0.2.0-SNAPSHOT

  
  A Clojure interface to the Lucene search engine

  ---

  chapmanb 2011-01-18
• org.clojars.chapmanb/cofoja 1.0-r139

  
  POM was created from install:install-file

  ---

  chapmanb 2012-11-01
• org.clojars.chapmanb/fast-random-forest 0.98

  
  POM was created from install:install-file

  ---

  chapmanb 2012-05-11
• org.clojars.chapmanb/gatk 1.6.13

  
  GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit

  ---

  chapmanb 2012-06-28
• org.clojars.chapmanb/gatk-engine 3.2

  
  GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit

  ---

  chapmanb 2014-08-04
• org.clojars.chapmanb/gatk-framework 3.0

  
  GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit

  ---

  chapmanb 2014-03-08
• org.clojars.chapmanb/gatk-lite 2.8.1

  
  GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit

  ---

  chapmanb 2014-01-15
• org.clojars.chapmanb/gatk-tools-public 3.2

  
  GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit

  ---

  chapmanb 2014-08-04
• org.clojars.chapmanb/gatk-utils 3.2

  
  GATK is a structured software library for writing efficient analysis tools using next-generation sequencing data http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit

  ---

  chapmanb 2014-08-04
• org.clojars.chapmanb/genomespace-cdk 0.1-SNAPSHOT

  
  GenomeSpace integration toolkit CDK http://www.genomespace.org/

  ---

  chapmanb 2012-06-05
• org.clojars.chapmanb/hadoop-bam 3.0

  
  Java library for manipulation of BAM (Binary Alignment/Map) files using the Hadoop MapReduce framework

  ---

  chapmanb 2011-11-09
• org.clojars.chapmanb/htsjdk 1.112

  
  A Java API for high-throughput sequencing data (HTS) formats. https://github.com/samtools/htsjdk

  ---

  chapmanb 2014-08-04
• org.clojars.chapmanb/jama 1.0.2

  
  JAMA is a basic linear algebra package for Java. http://math.nist.gov/javanumerics/jama/

  ---

  chapmanb 2012-07-27
• org.clojars.chapmanb/jnomics 0.1.1-a12

  
  cloud-scale sequence analysis suite build on Hadoop http://jnomics.sourceforge.net

  ---

  chapmanb 2012-01-22
• org.clojars.chapmanb/picard 1.112

  
  Java API (SAM-JDK) for creating new programs that read and write SAM files http://picard.sourceforge.net/

  ---

  chapmanb 2014-08-04
• org.clojars.chapmanb/sam 1.107

  
  Java API (SAM-JDK) for creating new programs that read and write SAM files http://picard.sourceforge.net/

  ---

  chapmanb 2014-03-08
• org.clojars.chapmanb/snpeff 3.1

  
  Variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).

  ---

  chapmanb 2012-12-20